check_bootstrap_args: check_bootstrap_args

In NathanSkene/EWCE: Expression Weighted Celltype Enrichment

check_bootstrap_args

Description

Check the input arguments of the bootstrap_enrichment_test.

Usage

check_bootstrap_args(
  sct_data,
  hits,
  annotLevel,
  reps,
  controlledCT = NULL,
  fix_celltypes = TRUE
)

Arguments

sct_data	List generated using generate_celltype_data.
hits	List of gene symbols containing the target gene list. Will automatically be converted to human gene symbols if geneSizeControl=TRUE.
annotLevel	An integer indicating which level of sct_data to analyse (Default: 1).
reps	Number of random gene lists to generate (Default: 100, but should be >=10,000 for publication-quality results).
controlledCT	[Optional] If not NULL, and instead is the name of a cell type, then the bootstrapping controls for expression within that cell type.

Value

Null output.

NathanSkene/EWCE documentation built on Nov. 3, 2024, 8:16 a.m.