plot_ctd: Plot _CellTypeData_ metrics

In NathanSkene/EWCE: Expression Weighted Celltype Enrichment

Plot CellTypeData metrics

Description

Plot CellTypeData metrics such as mean_exp, specificity and/or specificity_quantiles.

Usage

plot_ctd(ctd, genes, level = 1, metric = "specificity", show_plot = TRUE)

Arguments

ctd	CellTypeDataset.
genes	Which genes in ctd to plot.
level	Annotation level in ctd to plot.
metric	Which metric in the ctd to plot: "mean_exp" "specificity" "specificity_quantiles"
show_plot	Whether to print the plot or simply return it.

Value

ggplot object.

Examples

ctd <- ewceData::ctd()
plt <- EWCE::plot_ctd(ctd, genes = c("Apoe", "Gfap", "Gapdh"))

NathanSkene/EWCE documentation built on Nov. 3, 2024, 8:16 a.m.