add_res_to_merging_list: Add to results to merging list

In NathanSkene/EWCE: Expression Weighted Celltype Enrichment

Add to results to merging list

Description

add_res_to_merging_list adds EWCE results to a list for merging analysis.

Usage

add_res_to_merging_list(full_res, existing_results = NULL)

Arguments

full_res	Results list generated using bootstrap_enrichment_test or ewce_expression_data functions. Multiple results tables can be merged into one results table, as long as the 'list' column is set to distinguish them.
existing_results	Output of previous rounds from adding results to list. Leave empty if this is the first item in the list.

Value

Merged results list.

Examples

# Load the single cell data
ctd <- ewceData::ctd()

# Load the data
tt_alzh <- ewceData::tt_alzh()
# tt_alzh_BA36 <- ewceData::tt_alzh_BA36()
# Use 3 bootstrap lists for speed, for publishable analysis use >10000
reps <- 3
# Use 5 up/down regulated genes (thresh) for speed, default is 250
thresh <- 5
# Run EWCE analysis
# tt_results <- ewce_expression_data(
#    sct_data = ctd, tt = tt_alzh, annotLevel = 1, thresh = thresh,
#    reps = reps, ttSpecies = "human", sctSpecies = "mouse"
# )
# tt_results_36 <- ewce_expression_data(
#    sct_data = ctd, tt = tt_alzh_BA36, annotLevel = 1, thresh = thresh,
#    reps = reps, ttSpecies = "human", sctSpecies = "mouse"
# )

# Fill a list with the results
results <- add_res_to_merging_list(tt_alzh)
# results <- add_res_to_merging_list(tt_alzh_BA36, results)

NathanSkene/EWCE documentation built on Nov. 3, 2024, 8:16 a.m.