API for MSKCC-Epi-Bio/gnomeR
Wrangle and analyze IMPACT and TCGA mutation data
| Global functions | |
|---|---|
| %>% | Man page |
| .abort_if_not_numeric | Man page Source code |
| .check_for_fus_in_mut | Man page Source code |
| .check_for_silent | Man page Source code |
| .check_required_cols | Man page Source code |
| .clean_and_check_cols | Man page Source code |
| .cna_gene_binary | Man page |
| .filter_to_sample_list | Man page Source code |
| .fusions_gene_binary | Man page |
| .infer_mutation_status | Man page Source code |
| .infer_variant_type | Man page Source code |
| .mutations_gene_binary | Man page |
| .paste_endings | Man page Source code |
| .process_binary | Man page Source code |
| .sum_alts_in_pathway | Man page Source code |
| add.perc | Source code |
| add_pathways | Man page Source code |
| annotate_any_panel | Man page Source code |
| annotate_specific_panel | Man page |
| clin_collab_df | Man page |
| cna | Man page |
| cna_wide | Man page |
| consequence_map | Man page |
| create_gene_binary | Man page Source code |
| extract_patient_id | Man page Source code |
| gene_panels | Man page |
| genie_alias_table | Man page |
| genie_cna | Man page |
| genie_fusion | Man page |
| genie_mut | Man page |
| ggcomut | Man page Source code |
| gggenecor | Man page Source code |
| ggsamplevar | Man page Source code |
| ggtopgenes | Man page Source code |
| ggvarclass | Man page Source code |
| ggvartype | Man page Source code |
| gnomeR | Man page |
| gnomeR-package | Man page |
| gnomer_colors | Man page |
| gnomer_palette | Man page Source code |
| gnomer_palettes | Man page |
| impact_alias_table | Man page |
| mutation_viz | Man page Source code |
| mutations | Man page |
| names_df | Man page |
| pathways | Man page |
| pivot_cna_longer | Man page Source code |
| pivot_cna_wider | Man page Source code |
| recode_alias | Man page Source code |
| recode_cna | Man page Source code |
| reexports | Man page |
| reformat_fusion | Man page Source code |
| rename_columns | Man page Source code |
| reset_gnomer_palette | Man page Source code |
| resolve_alias | Man page Source code |
| seg | Man page |
| set_gnomer_palette | Man page Source code |
| show_col | Man page |
| specify_impact_panels | Man page Source code |
| subset_by_frequency | Man page Source code |
| subset_by_panel | Man page Source code |
| summarize_by_gene | Man page Source code |
| summarize_by_patient | Man page Source code |
| sv | Man page |
| sv_long | Man page |
| tbl_genomic | Man page Source code |
| which_impact_panel | Man page |
