pathways: IMPACT Oncogenic Signaling Pathways
In MSKCC-Epi-Bio/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data
pathways R Documentation
IMPACT Oncogenic Signaling Pathways
Description
Oncogenic Signaling Pathways curated from Sanchez-Vega, F et al., 2018.
See cBioPortal.org for more information
Usage
pathways
Format
A list of common cancer pathways and their associated alterations
- pathway
name of pathway
- genes
vector of gene alterations in each pathways
Source
Sanchez-Vega, F., Mina, M., Armenia, J., Chatila, W. K., Luna, A., La, K. C., Dimitriadoy, S., Liu, D. L., Kantheti, H. S., Saghafinia, S., Chakravarty, D., Daian, F., Gao, Q., Bailey, M. H., Liang, W. W., Foltz, S. M., Shmulevich, I., Ding, L., Heins, Z., Ochoa, A., … Schultz, N. (2018). Oncogenic Signaling Pathways in The Cancer Genome Atlas. Cell, 173(2), 321–337.e10. https://doi.org/10.1016/j.cell.2018.03.035
MSKCC-Epi-Bio/gnomeR documentation built on Oct. 17, 2024, 3:39 p.m.
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| pathways | R Documentation |
IMPACT Oncogenic Signaling Pathways
Description
Oncogenic Signaling Pathways curated from Sanchez-Vega, F et al., 2018. See cBioPortal.org for more information
Usage
pathways
Format
A list of common cancer pathways and their associated alterations
- pathway
name of pathway
- genes
vector of gene alterations in each pathways
Source
Sanchez-Vega, F., Mina, M., Armenia, J., Chatila, W. K., Luna, A., La, K. C., Dimitriadoy, S., Liu, D. L., Kantheti, H. S., Saghafinia, S., Chakravarty, D., Daian, F., Gao, Q., Bailey, M. H., Liang, W. W., Foltz, S. M., Shmulevich, I., Ding, L., Heins, Z., Ochoa, A., … Schultz, N. (2018). Oncogenic Signaling Pathways in The Cancer Genome Atlas. Cell, 173(2), 321–337.e10. https://doi.org/10.1016/j.cell.2018.03.035
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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