names_df: Data Frame of Column Names
In MSKCC-Epi-Bio/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data

names_df

R Documentation

Data Frame of Column Names

Description

Data frame of accepted data names for standard genomic files. This serves as a dictionary to help disambiguate raw column names from user entered mutation, CNA or structural variant data

Usage

names_df

Format

A data frame

maf_column_name: data field names as they appear in common MAF file
api_column_name: data field names as they appear in common cBioPortal API retrieved files
mutation_input: does this field appear in mutation files?
fusion_input: does this field appear in mutation/sv files?
cna_input: does this field appear in CNA files?
definition: variable definition
notes: data notes
sc_maf_column_name: snake case version of maf_column_name
sc_api_column_name: snake case version of api_column_name
internal_column_name: name used for each field for all internal processing functions