mutation_viz: Creates a set of plot summarising a mutation file.

In MSKCC-Epi-Bio/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data

Creates a set of plot summarising a mutation file.

Description

Creates a set of plot summarising a mutation file.

Usage

mutation_viz(mutation, ...)

Arguments

mutation	Raw mutation dataframe containing alteration data
...	any argument belonging to the gene_binary method

Value

Returns a list of the following plots:

varclass Barplot of counts of each variant classification

vartype Barplot of counts of each variant type

snvclass Histogram of counts of each SNV class

samplevar Histogram of counts variants per patient

topgenes Barplot of counts of top variant genes

genecor Correlation heatmap of the top 10 genes

Examples

mutation_viz(gnomeR::mutations)

MSKCC-Epi-Bio/gnomeR documentation built on Oct. 17, 2024, 3:39 p.m.