summarizeBootstraps: Summarize the bootstrap compartment estimates and compute...
In JordanVeldboom/compartmap: A/B compartment inference from ATAC-seq and methylation array data
Description
Usage
Arguments
Value
View source: R/summarizeBootstraps.R
Description
Summarize the bootstrap compartment estimates and compute Agresti-Coull confidence intervals
Usage
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summarizeBootstraps(
boot.list,
est.ab,
q = 0.95,
assay = c("array", "atac", "bisulfite")
)
Arguments
boot.list
List of bootstraps as GRanges objects
est.ab
The original compartment calls
q
Confidence interval to compute (0.95 for 95 percent CI)
assay
Type of assay we are working with
Value
A GRanges object with bootstraps summarized
JordanVeldboom/compartmap documentation built on July 3, 2020, 6:32 p.m.
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Description Usage Arguments Value
View source: R/summarizeBootstraps.R
Description
Summarize the bootstrap compartment estimates and compute Agresti-Coull confidence intervals
Usage
1 2 3 4 5 6 | summarizeBootstraps(
boot.list,
est.ab,
q = 0.95,
assay = c("array", "atac", "bisulfite")
)
|
Arguments
boot.list |
List of bootstraps as GRanges objects |
est.ab |
The original compartment calls |
q |
Confidence interval to compute (0.95 for 95 percent CI) |
assay |
Type of assay we are working with |
Value
A GRanges object with bootstraps summarized
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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