getGlobalMeans: Get the global means of a matrix

In JordanVeldboom/compartmap: A/B compartment inference from ATAC-seq and methylation array data

Description

Get the global means of a matrix

Usage

getGlobalMeans(obj, targets = NULL, assay = c("array", "atac", "bisulfite"))

Arguments

obj	Input SummarizedExperiment object
targets	Column names or indices to indicate which samples to shrink towards
assay	What type of assay the data are from

Value

A vector of global or targeted means

Examples

data("meth_array_450k_chr14", package = "compartmap")
array.global.means <- getGlobalMeans(array.data.chr14, assay = "array")

JordanVeldboom/compartmap documentation built on July 3, 2020, 6:32 p.m.