preprocessBSseq: Preprocess BS-seq for compartment inference
In JordanVeldboom/compartmap: A/B compartment inference from ATAC-seq and methylation array data
Description
Usage
Arguments
Value
View source: R/getBSABsignal.R
Description
Preprocess BS-seq for compartment inference
Usage
1
preprocessBSseq(obj, genome = c("hg19", "hg38", "mm9", "mm10"), other = NULL)
Arguments
obj
Input SummarizedExperiment
genome
What genome are we working on ("hg19", "hg38", "mm9", "mm10")
other
Another arbitrary genome to compute compartments on
Value
A preprocessed SummarizedExperiment to compute compartments
JordanVeldboom/compartmap documentation built on July 3, 2020, 6:32 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/getBSABsignal.R
Description
Preprocess BS-seq for compartment inference
Usage
1 | preprocessBSseq(obj, genome = c("hg19", "hg38", "mm9", "mm10"), other = NULL)
|
Arguments
obj |
Input SummarizedExperiment |
genome |
What genome are we working on ("hg19", "hg38", "mm9", "mm10") |
other |
Another arbitrary genome to compute compartments on |
Value
A preprocessed SummarizedExperiment to compute compartments
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.