condenseRE: Condense a RaggedExperiment to a list of...
In JordanVeldboom/compartmap: A/B compartment inference from ATAC-seq and methylation array data
Description
Usage
Arguments
Value
Examples
Description
Condense a RaggedExperiment to a list of SummarizedExperiments
Usage
1
condenseRE(obj)
Arguments
obj
Input RaggedExperiment
Value
A list of SummarizedExperiments corresponding to the assays in the input
Examples
1
2
3
4
5
grl <- GRangesList(GRanges(c("A:1-5", "A:4-6", "A:10-15"), score=1:3),
GRanges(c("A:1-5", "B:1-3"), score=4:5))
names(grl) <- c("A", "B")
x <- RaggedExperiment(grl)
x.condense <- condenseRE(x)
JordanVeldboom/compartmap documentation built on July 3, 2020, 6:32 p.m.
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Description Usage Arguments Value Examples
Description
Condense a RaggedExperiment to a list of SummarizedExperiments
Usage
1 | condenseRE(obj)
|
Arguments
obj |
Input RaggedExperiment |
Value
A list of SummarizedExperiments corresponding to the assays in the input
Examples
1 2 3 4 5 | grl <- GRangesList(GRanges(c("A:1-5", "A:4-6", "A:10-15"), score=1:3),
GRanges(c("A:1-5", "B:1-3"), score=4:5))
names(grl) <- c("A", "B")
x <- RaggedExperiment(grl)
x.condense <- condenseRE(x)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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