meanSmoother: Windowed mean smoother

In JordanVeldboom/compartmap: A/B compartment inference from ATAC-seq and methylation array data

Description

Windowed mean smoother

Usage

meanSmoother(x, k = 1, iter = 2, na.rm = TRUE)

Arguments

x	Input data matrix where samples are columns and regions/loci are rows
k	The number of windows to use (k=1 is 3 windows and k=2 is 5 windows)
iter	The number of iterations to smooth
na.rm	Whether to remove NAs prior to smoothing

Value

Smoothed data matrix

Examples

dummy <- matrix(rnorm(10000), ncol=25)
smooth.dummy <- meanSmoother(dummy)

JordanVeldboom/compartmap documentation built on July 3, 2020, 6:32 p.m.