systemBowtie2: Wrapper for bowtie2

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Wrapper for bowtie2.

Usage

## Default S3 method:
systemBowtie2(commandName="bowtie2", ...,
  system2ArgsList=list(stdout = TRUE, stderr = FALSE), .fake=FALSE, verbose=FALSE)

Arguments

commandName	A character string specifying the bowtie2 command.
...	Additional arguments specifying bowtie2 command line switches.
system2ArgsList	Named list of arguments to pass to internal system2 call.
.fake	If TRUE, the executable is not called.
verbose	See Verbose.

Author(s)

Taku Tokuyasu

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.