byOrganism.FastaReferenceFile: Locates a FASTA file by organism

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Locates a FASTA file by organism.

Usage

## Static method (use this):
## FastaReferenceFile$byOrganism(organism, ...)

## Don't use the below:
## S3 method for class 'FastaReferenceFile'
byOrganism(static, organism, ...)

Arguments

organism	A character string specifying for which organism a file should be retrieved.
tags	(not used) A character vector.
prefix	(optional) A character string specifying an optional regular expression prefix to be prepended to pattern when searching for the file.
pattern	A character string specifying a regular expression for the file to be located.
...	Additional arguments passed to the constructor of FastaReferenceFile when instantiating the object.

Value

Returns a FastaReferenceFile.

Author(s)

Henrik Bengtsson

See Also

For more information see FastaReferenceFile.

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.