buildTopHat2TranscriptomeIndexSet.Bowtie2IndexSet: Calls TopHat to build a transcriptome index

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Calls TopHat to build a transcriptome index.

Arguments

gtf	GtfDataFile to be indexed
outPath	(optional) Output directory for index and log file.
...	Arguments passed to tophat().
skip	If TRUE, the index files are not rebuilt if already available.
verbose	See Verbose.

Author(s)

Taku Tokuyasu

References

[1] TopHat - A spliced read mapper for RNA-Seq, 2015. http://ccb.jhu.edu/software/tophat/

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.