aroma.seq-package: Package aroma.seq

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Simple, flexible and distributed processing of very large-scale HT- Seq data - available at the R prompt [RATHER EARLY VERSION].

Requirements

TBA.

External software requirements

The following external tools utilized by this package:

• bowtie2: http://bowtie-bio.sourceforge.net/bowtie2/

• BWA: http://bio-bwa.sourceforge.net/

• samtools: http://samtools.sourceforge.net/

Some of the external tools are available for Windows from [1].

Installation and updates

TBA.

To get started

TBA.

How to cite this package

Bengtsson H et al. (2016). aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework https://github.com/HenrikBengtsson/aroma.seq.

License

The releases of this package is licensed under LGPL version 2.1 or newer.

The development code of the packages is under a private licence (where applicable) and patches sent to the author fall under the latter license, but will be, if incorporated, released under the "release" license above.

Author(s)

Henrik Bengtsson

References

[1] BOW - Bioinformatics On Windows, http://bow.codeplex.com/.

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.