convertToSam: Converts a SAM (BAM) file (set of files) set into a BAM (SAM)...
In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Converts a SAM (BAM) file (set of files) set into a BAM (SAM) file (set of files).
When converting to BAM, the generated BAM files are all sorted and indexed as well.
Usage
1
Arguments
path
The destination path.
skip
If TRUE, already converted files are skipped, otherwise not.
overwrite
If TRUE, already converted files are ignored and overwritten.
verbose
See Verbose.
...
Not used.
Value
convertToBam() returns a (sorted and indexed) BamDataFile (BamDataSet).
convertToSam() returns a SamDataFile (SamDataSet).
Author(s)
Henrik Bengtsson
See Also
Internally asBam or asSam is utilized.
HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also
Description
Converts a SAM (BAM) file (set of files) set into a BAM (SAM) file (set of files). When converting to BAM, the generated BAM files are all sorted and indexed as well.
Usage
1 |
Arguments
path |
The destination path. |
skip |
If |
overwrite |
If |
verbose |
See |
... |
Not used. |
Value
convertToBam() returns a (sorted and indexed) BamDataFile (BamDataSet).
convertToSam() returns a SamDataFile (SamDataSet).
Author(s)
Henrik Bengtsson
See Also
Internally asBam or asSam is utilized.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.