API for Danis102/seqpac
Seqpac: A Framework for smallRNA analysis in R using Sequence-Based Counts
| Global functions | |
|---|---|
| .onAttach | Source code |
| PAC | Man page Source code |
| PAC-class | Man page |
| PAC_check | Man page Source code |
| PAC_covplot | Man page Source code |
| PAC_deseq | Man page Source code |
| PAC_filter | Man page Source code |
| PAC_filtsep | Man page Source code |
| PAC_gtf | Man page Source code |
| PAC_jitter | Man page Source code |
| PAC_mapper | Man page Source code |
| PAC_nbias | Man page Source code |
| PAC_norm | Man page Source code |
| PAC_pca | Man page Source code |
| PAC_pie | Man page Source code |
| PAC_saturation | Man page Source code |
| PAC_sizedist | Man page Source code |
| PAC_stackbar | Man page Source code |
| PAC_summary | Man page Source code |
| PAC_trna | Man page Source code |
| add_reanno | Man page Source code |
| anno | Man page |
| anno, | Man page |
| anno,PAC-method | Man page |
| anno.PAC | Source code |
| anno<- | Man page |
| anno<-,PAC,data.frame-method | Man page |
| as.PAC | Man page Source code |
| as.reanno | Man page Source code |
| colnames,PAC-method | Man page |
| colnames.PAC | Source code |
| counts | Man page |
| counts, | Man page |
| counts,PAC-method | Man page |
| counts.PAC | Source code |
| counts<- | Man page |
| counts<-,PAC,data.frame-method | Man page |
| create_PAC | Man page Source code |
| filtsep_bin | Man page Source code |
| full | Man page |
| full, | Man page |
| full,reanno-method | Man page |
| full.reanno | Source code |
| full<- | Man page |
| full<-,reanno,list-method | Man page |
| getTrim | Source code |
| import_reanno | Man page Source code |
| length,PAC-method | Man page |
| length,reanno-method | Man page |
| length.PAC | Source code |
| length.reanno | Source code |
| make_PAC | Man page Source code |
| make_conv | Man page Source code |
| make_counts | Man page Source code |
| make_cutadapt | Man page Source code |
| make_pheno | Man page Source code |
| make_reanno | Man page Source code |
| make_trim | Man page Source code |
| map_rangetype | Man page Source code |
| map_reanno | Man page Source code |
| merge_lanes | Man page Source code |
| names,PAC-method | Man page |
| names,reanno-method | Man page |
| names.PAC | Source code |
| names.reanno | Source code |
| ncol,PAC-method | Man page |
| ncol.PAC | Source code |
| norm | Man page |
| norm, | Man page |
| norm,PAC-method | Man page |
| norm.PAC | Source code |
| norm<- | Man page |
| norm<-,PAC,list-method | Man page |
| nrow,PAC-method | Man page |
| nrow,reanno-method | Man page |
| nrow.PAC | Source code |
| nrow.reanno | Source code |
| overview | Man page |
| overview, | Man page |
| overview,reanno-method | Man page |
| overview.reanno | Source code |
| overview<- | Man page |
| overview<-,reanno,data.frame-method | Man page |
| pheno | Man page |
| pheno, | Man page |
| pheno,PAC-method | Man page |
| pheno.PAC | Source code |
| pheno<- | Man page |
| pheno<-,PAC,data.frame-method | Man page |
| reanno | Man page Source code |
| reanno-class | Man page |
| rownames,PAC-method | Man page |
| rownames,reanno-method | Man page |
| rownames.PAC | Source code |
| rownames.reanno | Source code |
| show.PAC | Man page Source code |
| simplify_reanno | Man page Source code |
| summary | Man page |
| summary, | Man page |
| summary,PAC-method | Man page |
| summary.PAC | Source code |
| summary<- | Man page |
| summary<-,PAC,list-method | Man page |
| tRNA_class | Man page Source code |
