TMECompendium.xCell2Ref: Tumor Microenvironment Compendium Reference
In AlmogAngel/xCell2: A Tool for Generic Cell Type Enrichment Analysis
TMECompendium.xCell2Ref R Documentation
Tumor Microenvironment Compendium Reference
Description
A reference object for use in 'xCell2Analysis' or to create a new reference using 'xCell2Train'.
Usage
data(TMECompendium.xCell2Ref, package = "xCell2")
Format
An 'xCell2Object' (S4) containing:
paramsA tibble of parameters for linear transformation.
signaturesA list containing cell-type signatures.
dependenciesA list specifying cell type dependencies.
spill_matA matrix representing spillover correction factors.
genes_usedA character vector of genes used to generate the reference.
Details
xCell2 Object Trained from the Tumor Microenvironment Compendium Reference
An xCell2 reference object created from the Tumor Microenvironment Compendium reference.
Source
Curated by Zaitsev A (2022) and trained by Angel A, et al. (2024).
AlmogAngel/xCell2 documentation built on Oct. 14, 2024, 4:51 a.m.
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| TMECompendium.xCell2Ref | R Documentation |
Tumor Microenvironment Compendium Reference
Description
A reference object for use in 'xCell2Analysis' or to create a new reference using 'xCell2Train'.
Usage
data(TMECompendium.xCell2Ref, package = "xCell2")
Format
An 'xCell2Object' (S4) containing:
paramsA tibble of parameters for linear transformation.
signaturesA list containing cell-type signatures.
dependenciesA list specifying cell type dependencies.
spill_matA matrix representing spillover correction factors.
genes_usedA character vector of genes used to generate the reference.
Details
xCell2 Object Trained from the Tumor Microenvironment Compendium Reference
An xCell2 reference object created from the Tumor Microenvironment Compendium reference.
Source
Curated by Zaitsev A (2022) and trained by Angel A, et al. (2024).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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