BlueprintEncode.xCell2Ref: Blueprint and ENCODE Projects Reference

In AlmogAngel/xCell2: A Tool for Generic Cell Type Enrichment Analysis

Blueprint and ENCODE Projects Reference

Description

A reference object for use in 'xCell2Analysis' or to create a new reference using 'xCell2Train'.

Usage

data(BlueprintEncode.xCell2Ref, package = "xCell2")

Format

An 'xCell2Object' (S4) containing:

params

A tibble of parameters for linear transformation.

signatures

A list containing cell-type signatures.

dependencies

A list specifying cell type dependencies.

spill_mat

A matrix representing spillover correction factors.

genes_used

A character vector of genes used to generate the reference.

Details

xCell2 Object Trained from the Blueprint and ENCODE Projects Reference

An xCell2 reference object created from the Blueprint and ENCODE projects reference.

Source

Martens JHA and Stunnenberg HG (2013); The ENCODE Project Consortium (2012), curated by Aran D (2019); trained by Angel A, et al. (2024).

AlmogAngel/xCell2 documentation built on Oct. 14, 2024, 4:51 a.m.