BlueprintEncode.xCell2Ref: Blueprint and ENCODE Projects Reference

In AlmogAngel/xCell2: A Tool for Generic Cell Type Enrichment Analysis

Blueprint and ENCODE Projects Reference

Description

Pre-trained xCell2 reference for use in xCell2Analysis or extending via xCell2Train.

Usage

data(BlueprintEncode.xCell2Ref, package = "xCell2")

Format

An xCell2Object containing:

params

Linear transformation parameters.

signatures

Gene signatures for cell types.

dependencies

Cell lineage dependencies.

spill_mat

Spillover correction matrix.

genes_used

Genes included in the reference.

Details

Blueprint and ENCODE Projects Reference (human)

A pre-trained xCell2 reference object based on the Blueprint and ENCODE projects datasets.

Source

Martens JHA and Stunnenberg HG (2013); The ENCODE Project Consortium (2012), curated by Aran D (2019); trained by Angel A, et al. (2024).

See Also

xCell2Analysis and xCell2Train.

AlmogAngel/xCell2 documentation built on Jan. 24, 2025, 10:39 a.m.