PanCancer.xCell2Ref: PanCancer Reference

In AlmogAngel/xCell2: A Tool for Generic Cell Type Enrichment Analysis

PanCancer Reference

Description

A reference object for use in 'xCell2Analysis' or to create a new reference using 'xCell2Train'.

Usage

data(PanCancer.xCell2Ref, package = "xCell2")

Format

An 'xCell2Object' (S4) containing:

params

A tibble of parameters for linear transformation.

signatures

A list containing cell-type signatures.

dependencies

A list specifying cell type dependencies.

spill_mat

A matrix representing spillover correction factors.

genes_used

A character vector of genes used to generate the reference.

Details

xCell2 Object Trained from the PanCancer Reference

An xCell2 reference object created from the PanCancer reference.

Source

Generated by Nofech-Mozes I (2023); trained by Angel A, et al. (2024).

AlmogAngel/xCell2 documentation built on Oct. 14, 2024, 4:51 a.m.