DICE_demo.xCell2Ref: Demo xCell2 Reference Object

In AlmogAngel/xCell2: A Tool for Generic Cell Type Enrichment Analysis

Demo xCell2 Reference Object

Description

This object can be used to learn and demonstrate the functionality of the 'xCell2Analysis' function.

Usage

data(DICE_demo.xCell2Ref, package = "xCell2")

Format

An 'xCell2Object' (S4) containing:

params

A tibble of parameters for linear transformation.

signatures

A list containing cell-type signatures.

dependencies

A list specifying cell type dependencies.

spill_mat

A matrix representing spillover correction factors.

genes_used

A character vector of genes used to generate the reference.

Details

Demo xCell2 Reference Object from a Subset of the DICE Reference

A demo xCell2 reference object derived from a subset of the DICE reference dataset.

Source

Schmiedel B et al. (2018)

AlmogAngel/xCell2 documentation built on Oct. 14, 2024, 4:51 a.m.