AlmogAngel/xCell2: A Tool for Generic Cell Type Enrichment Analysis
xCell2 provides methods for cell type enrichment analysis using cell type signatures. It includes three main functions - 1. xCell2Train for training custom references objects from bulk or single-cell RNA-seq datasets. 2. xCell2Analysis for conducting the cell type enrichment analysis using the custom reference. 3. xCell2GetLineage for identifying dependencies between different cell types using ontology.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | DifferentialExpression GeneExpression GeneSetEnrichment ImmunoOncology Microarray RNASeq SingleCell Transcriptomics |
| Maintainer | |
| License | GPL (>= 3) |
| Version | 0.99.94 |
| URL | https://github.com/AlmogAngel/xCell2 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
