seuratSCTransform: seuratSCTransform Runs the SCTransform function to...
In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
Description
Usage
Arguments
Value
Examples
View source: R/seuratFunctions.R
Description
seuratSCTransform
Runs the SCTransform function to transform/normalize the input data
Usage
1
seuratSCTransform(inSCE, normAssayName = "SCTCounts", useAssay = "counts")
Arguments
inSCE
Input SingleCellExperiment object
normAssayName
Name for the output data assay. Default "SCTCounts".
useAssay
Name for the input data assay. Default "counts".
Value
Updated SingleCellExperiment object containing the transformed data
Examples
1
2
data(sce_chcl, package = "scds")
sce_chcl <- seuratSCTransform(sce_chcl, "SCTCounts", "counts")
singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.
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Description Usage Arguments Value Examples
View source: R/seuratFunctions.R
Description
seuratSCTransform Runs the SCTransform function to transform/normalize the input data
Usage
1 | seuratSCTransform(inSCE, normAssayName = "SCTCounts", useAssay = "counts")
|
Arguments
inSCE |
Input SingleCellExperiment object |
normAssayName |
Name for the output data assay. Default |
useAssay |
Name for the input data assay. Default |
Value
Updated SingleCellExperiment object containing the transformed data
Examples
1 2 | data(sce_chcl, package = "scds")
sce_chcl <- seuratSCTransform(sce_chcl, "SCTCounts", "counts")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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