getBiomarker: Given a list of genes and a SingleCellExperiment object,...
In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
Description
Usage
Arguments
Value
Examples
Description
Given a list of genes and a SingleCellExperiment object, return
the binary or continuous expression of the genes.
Usage
1
getBiomarker(inSCE, gene, binary = "Binary", useAssay = "counts")
Arguments
inSCE
Input SingleCellExperiment object.
gene
gene list
binary
"Binary" for binary expression or "Continuous" for a gradient.
Default: "Binary"
useAssay
Indicate which assay to use. The default is "counts".
Value
getBiomarker(): A data.frame of expression values
Examples
1
getBiomarker(mouseBrainSubsetSCE, gene="C1qa")
singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Given a list of genes and a SingleCellExperiment object, return the binary or continuous expression of the genes.
Usage
1 | getBiomarker(inSCE, gene, binary = "Binary", useAssay = "counts")
|
Arguments
inSCE |
Input SingleCellExperiment object. |
gene |
gene list |
binary |
"Binary" for binary expression or "Continuous" for a gradient. Default: "Binary" |
useAssay |
Indicate which assay to use. The default is "counts". |
Value
getBiomarker(): A data.frame of expression values
Examples
1 | getBiomarker(mouseBrainSubsetSCE, gene="C1qa")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.