enrichRSCE: enrichR Given a list of genes this function runs the...

In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Description

enrichR Given a list of genes this function runs the enrichR() to perform Gene enrichment

Usage

enrichRSCE(inSCE, glist, db = NULL)

Arguments

inSCE	Input SingleCellExperiment object.
glist	selected genes for enrichment analysis using enrichR(). Required
db	selected database name from the enrichR database list. if NULL then enrichR will be run on all the available databases on the enrichR database.

Value

enrichRSCE(): returns a data.frame of enrichment terms overlapping in the respective databases along with p-values, z-scores etc.,

Examples

## Not run: 
enrichRSCE(mouseBrainSubsetSCE, "Cmtm5", "GO_Cellular_Component_2017")

## End(Not run)

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.