dot-ggBar: Bar plot plotting tool.

In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Description

Visualizes specified values via a violin plot.

Usage

.ggBar(
  y,
  groupBy = NULL,
  xlab = NULL,
  ylab = NULL,
  axisSize = 10,
  axisLabelSize = 10,
  dotSize = 1,
  transparency = 1,
  defaultTheme = TRUE,
  gridLine = FALSE,
  summary = NULL,
  title = NULL,
  titleSize = 15
)

Arguments

y	Numeric values to be plotted on y-axis.
groupBy	Groupings for each numeric value. A user may input a vector equal length to the number of the samples in the SingleCellExperiment object, or can be retrieved from the colData slot. Default NULL.
xlab	Character vector. Label for x-axis. Default NULL.
ylab	Character vector. Label for y-axis. Default NULL.
axisSize	Size of x/y-axis ticks. Default 10.
axisLabelSize	Size of x/y-axis labels. Default 10.
dotSize	Size of dots. Default 1.
transparency	Transparency of the dots, values will be 0-1. Default 1.
defaultTheme	Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE.
gridLine	Adds a horizontal grid line if TRUE. Will still be drawn even if defaultTheme is TRUE. Default FALSE.
summary	Adds a summary statistic, as well as a crossbar to the violin plot. Options are "mean" or "median". Default NULL.
title	Title of plot. Default NULL.
titleSize	Size of title of plot. Default 15.

Value

a ggplot of the reduced dimensions.

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.