calcEffectSizes: Finds the effect sizes for all genes in the original dataset,...
In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Description Usage Arguments Value Examples

Finds the effect sizes for all genes in the original dataset, regardless of significance.

1	calcEffectSizes(countMatrix, condition)

`countMatrix`	Matrix. A simulated counts matrix, sans labels.
`condition`	Factor. The condition labels for the simulated cells. If more than 2 conditions are given, the first will be compared to all others by default.

A vector of cohen's d effect sizes for each gene.

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data("mouseBrainSubsetSCE")
res <- calcEffectSizes(assay(mouseBrainSubsetSCE, "counts"),
                       condition = colData(mouseBrainSubsetSCE)[, "level1class"])