plotBarcodeRankDropsResults: Plots for runEmptyDrops outputs.

In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Description

A wrapper function which visualizes outputs from the runEmptyDrops function stored in the colData slot of the SingleCellExperiment object via plots.

Usage

plotBarcodeRankDropsResults(
  inSCE,
  sample = NULL,
  defaultTheme = TRUE,
  dotSize = 1,
  titleSize = 18,
  axisLabelSize = 18,
  axisSize = 15,
  legendSize = 15
)

Arguments

inSCE	Input SingleCellExperiment object with saved dimension reduction components or a variable with saved results from runBarcodeRankDrops. Required.
sample	Character vector. Indicates which sample each cell belongs to. Default NULL.
defaultTheme	Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE.
dotSize	Size of dots. Default 1.
titleSize	Size of title of plot. Default 18.
axisLabelSize	Size of x/y-axis labels. Default 18.
axisSize	Size of x/y-axis ticks. Default 15.
legendSize	size of legend. Default 15.

Value

list of .ggplot objects

Examples

data(scExample, package="singleCellTK")
sce <- runBarcodeRankDrops(inSCE=sce)
plotBarcodeRankDropsResults(inSCE=sce)

singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.