listInteractionComponents: This function lists all components of a given interaction.

In rBiopaxParser: Parses BioPax files and represents them in R

Description

This function returns a (unique) data.frame listing IDs, names and classes of all components of the supplied interaction.

Usage

listInteractionComponents(
  biopax,
  id,
  splitComplexes = TRUE,
  returnIDonly = FALSE,
  biopaxlevel = 3
)

Arguments

biopax	A biopax model
id	string. A complex ID
splitComplexes	logical. If TRUE complexes are split up into their components and the added to the listing.
returnIDonly	logical. If TRUE only IDs of the components are returned. This saves tiem for looking up names for every single ID.
biopaxlevel	integer. Set the biopax level here if you supply a data.table directly.

Value

data.frame

Author(s)

Frank Kramer

Examples

 # load data
 data(biopaxexample)
 listInteractionComponents(biopax, id="ex_i_100036_activator_1")

rBiopaxParser documentation built on Nov. 8, 2020, 8:21 p.m.