diffGraphs: This function returns the different nodes and edges between...

In rBiopaxParser: Parses BioPax files and represents them in R

Description

This function returns the different nodes and edges between graph1 and graph2. Layout options of graph1 are kept. Coloring currently not implemented.

Usage

diffGraphs(graph1, graph2, colorNodes = TRUE, colors = c("#B3E2CD", "#FDCDAC"))

Arguments

graph1	graphNEL
graph2	graphNEL
colorNodes	logical
colors	character vector of colors. If colorNodes==TRUE these colors are used for graph1 and graph2 respectivley.

Value

Return the diff between the graphs.

Author(s)

Frank Kramer

Examples

 # load data
 data(biopaxexample)
 pwid1 = "pid_p_100002_wntpathway"
 pwid2 = "pid_p_100146_hespathway"
 mygraph1 = pathway2RegulatoryGraph(biopax, pwid1)
 mygraph2 = pathway2RegulatoryGraph(biopax, pwid2)
 plotRegulatoryGraph(diffGraphs(mygraph1,mygraph2))

rBiopaxParser documentation built on Nov. 8, 2020, 8:21 p.m.