rBiopaxParser
Parses BioPax files and represents them in R

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calcGraphOverlap: This function calculates the overlap of 2 graphs

calcGraphOverlap: This function calculates the overlap of 2 graphs
In rBiopaxParser: Parses BioPax files and represents them in R

Description Usage Arguments Value Author(s) Examples

View source: R/visualizeBiopax.R

Description

This function calculates the overlap of supplied graph1 with graph2. Layout and weights of graph1 are kept.

Usage

1
calcGraphOverlap(graph1, graph2)

Arguments

graph1

graphNEL

graph2

graphNEL

Value

Returns a list containing the compared graphs and edge- and node-wise overlap between them.

Author(s)

Frank Kramer

Examples

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 # load data
 data(biopaxexample)
 pwid1 = "pid_p_100002_wntpathway"
 pwid2 = "pid_p_100146_hespathway"
 mygraph1 = pathway2RegulatoryGraph(biopax, pwid1)
 mygraph2 = pathway2RegulatoryGraph(biopax, pwid2)
 calcGraphOverlap(mygraph1,mygraph2)

rBiopaxParser documentation built on Nov. 8, 2020, 8:21 p.m.

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