getInstanceProperty: This function returns all properties of the specified type...
In rBiopaxParser: Parses BioPax files and represents them in R

Description Usage Arguments Value Author(s) Examples

This function returns all properties of the specified type for an instance. By default this function returns the NAME property of an instance.

getInstanceProperty(
  biopax,
  id,
  property = "NAME",
  includeAllNames = TRUE,
  biopaxlevel = 3
)

`biopax`	A biopax model
`id`	string
`property`	string.
`includeAllNames`	logical. Biopax Level 3 brought 2 new name properties: displayName and standardName. Per default this return all names of an instance. Disable if you only want the NAME property.
`biopaxlevel`	integer. Set the biopax level here if you supply a data.table directly.

Returns a character vector with all properties of the selected type for this instance. Returns NULL if no property data is found.

fkramer

 # load data
 data(biopaxexample)
 getInstanceProperty(biopax, id="ex_m_100650", property="NAME")
 getInstanceProperty(biopax, id="ex_m_100650", property="ORGANISM")
 getInstanceProperty(biopax, id="ex_m_100650", property="COMPONENTS")