getParticipants: This function is used internally by pathway2Graph to obtain...

In rBiopaxParser: Parses BioPax files and represents them in R

Description

This function is used internally by pathway2Graph to obtain physical entities participating in an interaction.

Usage

getParticipants(
  pwComponentList,
  instance,
  biopaxlevel,
  splitComplexMolecules = FALSE,
  useIDasNodenames = TRUE
)

Arguments

pwComponentList	List of pathway components
instance	Biopax instance id
biopaxlevel	integer. Set the biopax level here if you supply a data.table directly.
splitComplexMolecules	logical. If TRUE complexes are split up into their components and the annotation of the components is added.
useIDasNodenames	logical. If TRUE nodes of the graph are named by their molecule IDs instead of using the NAME property. This can help with badly annotated/formatted databases.

Author(s)

Nirupama Benis

rBiopaxParser documentation built on Nov. 8, 2020, 8:21 p.m.