easyRNASeq-datasets: Dataset included in the package
In easyRNASeq: Count summarization and normalization for RNA-Seq data

The package contains a dataset from the Robinson, Delhomme et al., 2014 publication.

RobinsonDelhomme2014a normalised expression count table. This dataset was generated from 17 Populus tremula - Eurasian aspen - trees used to assess the sexual dimorphism of this dioecious species. This count matrix has been generating following published pre-processing guidelines - see http://www.epigenesys.eu/en/protocols/bio-informatics/1283-guidelines-for-rna-seq-data-analysis - and the resulting HTSeq files have been collated and the obtained raw count matrix submitted to a variance stabilising transformation. Subsequently, the values have been transformed so that the minimal vst values - that corresponds to an absence of expression - is 0. Hence the counts in the matrix are library-size normalized, variance stabilised expression values, with a minimal value of 0.

easyRNASeq documentation built on April 30, 2020, 2 a.m.