easyRNASeq-accessors: Accessors for RNAseq class

In easyRNASeq: Count summarization and normalization for RNA-Seq data

Description

These functions and generics define 'accessors' (to get and set values) for objects in the easyRNASeq package.

Usage

genomicAnnotation(obj)
readCounts(obj,count=c("exons","features","genes","islands","transcripts"),
summarization=c("bestExons","geneModels"),unique=FALSE)
genomicAnnotation(obj) <- value

Arguments

obj	An object derived from class RNAseq.
count	The type of count you want to access, 'genes','features','exons','transcripts' or 'islands'
summarization	If count is set to genes, precise the type of summarization, 'bestExons' or 'geneModels'
unique	For the 'exons' count only. Should the counts returned be unique for their identifier (i.e. the matrix row names)?
value	The replacement value.

Value

Usually, the value of the corresponding slot, or other simple content described on the help page of easyRNASeq.

Author(s)

Nicolas Delhomme

Examples

# This class is deprecated and as such there are no exmples of its use

easyRNASeq documentation built on April 30, 2020, 2 a.m.