easyRNASeq-BamParam-class: Class "BamParam"

In easyRNASeq: Count summarization and normalization for RNA-Seq data

Description

A class describing the parameters of a bam file issued from an RNA-Seq experiment.

Objects from the Class

Objects can be created by calls of the form new("BamParam", ...) or using the BamParam constructor.

Slots from the Class

The BamParam class has the following slots:

• paired

• stranded

• strandProtocol

• yieldSize

all of which can be accessed using the accordingly names accessor.

Author(s)

Nicolas Delhomme

See Also

• BamParam accessors

• RnaSeqParam

• RnaSeqParam constructor

• RnaSeqParam accessors

• simpleRNASeq function

• AnnotParam

• AnnotParam constructor

Examples

showClass("BamParam")

easyRNASeq documentation built on April 30, 2020, 2 a.m.