easyRNASeq-AnnotParam-accessors: Accessors for AnnotParam class

In easyRNASeq: Count summarization and normalization for RNA-Seq data

Description

These functions and generics define 'accessors' (to get and set values) for AnnotParam objects within the easyRNASeq package. Implemented are:

• datasource

• type

Usage

datasource(object)
## S4 method for signature 'AnnotParam'
type(x)

Arguments

object	An object derived from class AnnotParam.
x	An object derived from class AnnotParam.

Value

The value of the corresponding slot.

Author(s)

Nicolas Delhomme

See Also

The AnnotParam class. The type and organism generics are imported from the BSgenome and Biostrings package, respectively.

Examples

# fetch the example data
Dm.annot <- fetchData("Dmel-mRNA-exon-r5.52.gff3.gz")

annot <- AnnotParam(datasource=Dm.annot)
# get the datasource Parameter
datasource(annot)

easyRNASeq documentation built on April 30, 2020, 2 a.m.