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Calculates the coverage of high-throughput short-reads against a genome of reference and summarizes it per feature of interest (e.g. exon, gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq' or 'edgeR' package.
Package details |
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Author | Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler, Niklas Maehler |
Bioconductor views | GeneExpression Genetics ImmunoOncology Preprocessing RNASeq |
Maintainer | Nicolas Delhomme <nicolas.delhomme@umu.se> |
License | Artistic-2.0 |
Version | 2.24.1 |
Package repository | View on Bioconductor |
Installation |
Install the latest version of this package by entering the following in R:
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