Description Usage Arguments Details See Also Examples
View source: R/aCGH.plotting.R
This function display the genomic events and tests for the differences between groups if they are specified.
1 2 3 4 5 6 7 |
aCGH.obj |
an object of aCGH class. |
response |
phenotype to compare. defaults to all the samples being analyzed together. |
titles |
titles for the groups, defaults to the name of the |
X |
logical indicating whether X needs to be shown |
Y |
logical indicating whether Y needs to be shown |
maxChrom |
this parameter controls how many chromosomes will be plotted, from 1 to maxChrom |
chrominfo |
a chromosomal information associated with the mapping of the data |
num.plots.per.page |
number of frequency plots per page. Default is the number of groups |
factor |
|
posThres |
Threshold for gain. Set very high for homozygous deletion |
negThres |
Threshold for homozygous deletion |
This function utilizes output of the find.genomic.events
by plotting it and testing between groups. The test are performed
using kruskal-wallis rank test.
1 2 3 4 | data(colorectal)
## Plotting summary of the sample profiles
plotSummaryProfile(colorectal)
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