rnb.plot.region.site.density: rnb.plot.region.site.density

In RnBeads: RnBeads

Description

Plots the density of sites accross the specified region type

Usage

rnb.plot.region.site.density(rnb.set, region.type, extend.by = 0.33)

Arguments

rnb.set	RnBSet object
region.type	Region type for which the plot should be generated
extend.by	A number between 0 and 1 specifying the percentage by which a region is extended in order to capture methylation information before region start and after region end

Value

a ggplot2 object for plotting the plot shows the density of sites accross the specified region type for all regions of that type from 0 (region start) to 1 (region end). Sites in the flanking areas are also shown (coordinates <0 and >1).

Author(s)

Fabian Mueller

Examples

library(RnBeads.hg19)
data(small.example.object)
logger.start(fname=NA)
rnb.plot.region.site.density(rnb.set.example,"genes")

RnBeads documentation built on March 3, 2021, 2 a.m.