get.cpg.stats: get.cpg.stats
In RnBeads: RnBeads
Description
Usage
Arguments
Value
Author(s)
Description
Computes CpG-related statistics for the specified regions.
Usage
1
get.cpg.stats(chrom.sequence, starts, ends)
Arguments
chrom.sequence
Chromosome sequence, usually obtained from the assembly's genome definition. This must be an
object of type MaskedDNAString.
starts
integer vector of start positions for the regions of interest.
ends
integer vector of end positions for the regions of interest.
Value
Table of statistics for the regions in the form of a matrix with the following columns:
"CpG" and "GC". The columns contain the number of CpG dinucleoties and the number of C and G
bases in each region.
Author(s)
Yassen Assenov
RnBeads documentation built on March 3, 2021, 2 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Computes CpG-related statistics for the specified regions.
Usage
1 | get.cpg.stats(chrom.sequence, starts, ends)
|
Arguments
chrom.sequence |
Chromosome sequence, usually obtained from the assembly's genome definition. This must be an
object of type |
starts |
|
ends |
|
Value
Table of statistics for the regions in the form of a matrix with the following columns:
"CpG" and "GC". The columns contain the number of CpG dinucleoties and the number of C and G
bases in each region.
Author(s)
Yassen Assenov
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.