dpval-methods: dpval-methods

In RnBeads: RnBeads

Description

Extract detection p-values from an object of RnBeadSet class.

Usage

## S4 method for signature 'RnBeadSet'
dpval(object, type = "sites", row.names = FALSE, i = NULL, j = NULL)

Arguments

object	RnBeadSet or RnBeadRawSet object
type	character singleton. If sites detection p-values per each available site is returned. Otherwise should be one of region types for for which the summarized p-values are available
row.names	Flag indicating of row names are to be generated in the result.
i	Indices of sites/regions to be retrieved. By default (NULL), all will be retrieved.
j	Indices of samples to be retrieved. By default (NULL), all will be retrieved.

Value

detection p-values available for the dataset in the form of a matrix.

Examples

library(RnBeads.hg19)
data(small.example.object)
dp<-dpval(rnb.set.example, row.names=TRUE)
head(dp)

RnBeads documentation built on March 3, 2021, 2 a.m.