ClusterArchitecture-class: ClusterArchitecture Class
In RnBeads: RnBeads

Description Details Slots Methods Author(s)

A virtual class for storing specifications of architectures for different compute clusters. It is designed to let other classes inherit from it

For a concrete child class for a sun grid architecture specification see ClusterArchitectureSGE If you want to implement your own child class be sure to at least implement the following functions: getSubCmdTokens,ClusterArchitecture-method.

name: A name or identifier
executables: A NAMED character vector of executables that can be used by the cluster. For instance, the R executable is important
getSubCmdTokens.optional.args: character vector containing the valid optional arguments to the getSubCmdTokens,ClusterArchitecture-method function.

getSubCmdTokens,ClusterArchitecture-method: Returns a vector of command line tokens corresponding to submitting a job with the given command to the cluster
getSubCmdStr,ClusterArchitecture-method: Returns a string for the of command line corresponding to submitting a job with the given command to the cluster
setExecutable,ClusterArchitecture,character,character-method: Tells the cluster architecture about an executable that can be submitted as job
getExecutable,ClusterArchitecture,character-method: Gets the location of an executable associated with a name