rnb.plot.negative.boxplot: rnb.plot.negative.boxplot

In RnBeads: RnBeads

Description

Box plots of negative control probes

Usage

rnb.plot.negative.boxplot(
  rnb.set,
  sample.subset = 1:length(samples(rnb.set)),
  writeToFile = FALSE,
  name.prefix = NULL,
  ...
)

Arguments

rnb.set	RnBeadSet object with valid quality control information
sample.subset	an integer vector specifying the subset of samples for which the plotting should be performed
writeToFile	flag specifying whether the output should be saved as ReportPlot
name.prefix	in case writeToFile is TRUE, a character singleton specifying a prefix to the variable part of the image file names
...	other arguments to createReportPlot

Value

plot as an object of type ReportPlot if writeToFile is TRUE and of class ggplot otherwise.

Author(s)

Pavlo Lutsik

Examples

library(RnBeads.hg19)
data(small.example.object)
rnb.plot.negative.boxplot(rnb.set.example)

RnBeads documentation built on March 3, 2021, 2 a.m.