query_methy: Query methylation data

In NanoMethViz: Visualise methlation data from Oxford Nanopore sequencing

Description

Query methylation data

Usage

query_methy(x, chr, start, end, simplify = TRUE)

Arguments

x	the path to the methylation data (tabix-bgzipped)
chr	the vector of chromosomes
start	the vector of start positions
end	the vector of end positions
simplify	whether returned results should be row-concatenated

Value

A table containing the data within the queried regions. If simplify is TRUE (default) then all data is contained within one table, otherwise it is a list of tables where each element is the data from one region.

Examples

nmr <- load_example_nanomethresult()
query_methy(methy(nmr), "chr7", 6703892, 6730431)

NanoMethViz documentation built on Nov. 8, 2020, 4:51 p.m.