plot_region: Plot region

In NanoMethViz: Visualise methlation data from Oxford Nanopore sequencing

Description

Plot region

Usage

plot_region(x, chr, start, end, ...)

## S4 method for signature 'NanoMethResult,character,numeric,numeric'
plot_region(
  x,
  chr,
  start,
  end,
  anno_regions = NULL,
  spaghetti = FALSE,
  span = NULL
)

## S4 method for signature 'NanoMethResult,factor,numeric,numeric'
plot_region(
  x,
  chr,
  start,
  end,
  anno_regions = NULL,
  spaghetti = FALSE,
  span = NULL
)

Arguments

x	the NanoMethResult object
chr	the chromosome to plot
start	the start of the plotting region
end	the end of the plotting region
...	additional arguments
anno_regions	the data.frame of regions to be annotated
spaghetti	whether or not individual reads should be shown.
span	the span for loess smoothing.

Value

a ggplot object.

a ggplot object.

Examples

nmr <- load_example_nanomethresult()
plot_region(nmr, "chr7", 6703892, 6730431)

nmr <- load_example_nanomethresult()
plot_region(nmr, "chr7", 6703892, 6730431)

NanoMethViz documentation built on Nov. 8, 2020, 4:51 p.m.