bsseq_to_edger: Convert BSseq object to edgeR methylation matrix
In NanoMethViz: Visualise methlation data from Oxford Nanopore sequencing
Description
Usage
Arguments
Value
Examples
View source: R/bsseq_to_edger.R
Description
Convert BSseq object to edgeR methylation matrix
Usage
1
bsseq_to_edger(bsseq)
Arguments
bsseq
the BSseq object.
Value
a matrix compatible with the edgeR differential methylation pipeline
Examples
1
2
3
methy <- system.file("methy_subset.tsv.bgz", package = "NanoMethViz")
bsseq <- methy_to_bsseq(methy)
edger_mat <- bsseq_to_edger(bsseq)
NanoMethViz documentation built on Nov. 8, 2020, 4:51 p.m.
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Description Usage Arguments Value Examples
View source: R/bsseq_to_edger.R
Description
Convert BSseq object to edgeR methylation matrix
Usage
1 | bsseq_to_edger(bsseq)
|
Arguments
bsseq |
the BSseq object. |
Value
a matrix compatible with the edgeR differential methylation pipeline
Examples
1 2 3 | methy <- system.file("methy_subset.tsv.bgz", package = "NanoMethViz")
bsseq <- methy_to_bsseq(methy)
edger_mat <- bsseq_to_edger(bsseq)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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