methy_to_bsseq: Create BSSeq object from methylation tabix file

In NanoMethViz: Visualise methlation data from Oxford Nanopore sequencing

Description

Create BSSeq object from methylation tabix file

Usage

methy_to_bsseq(methy, out_folder = tempdir(), verbose = TRUE)

Arguments

methy	the path to the methylation tabix file.
out_folder	the folder to store intermediate files. One file is created for each sample and contains columns "chr", "pos", "total" and "methylated".
verbose	TRUE if progress messages are to be printed

Value

a BSSeq object.

Examples

methy <- system.file("methy_subset.tsv.bgz", package = "NanoMethViz")
bsseq <- methy_to_bsseq(methy)

NanoMethViz documentation built on Nov. 8, 2020, 4:51 p.m.