R/RcppExports.R

In wzthu/ATACpipe: An Easy-to-use Systematic pipeline for ATACseq data analysis

# Generated by using Rcpp::compileAttributes() -> do not edit by hand
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393

filterCells <- function(fragments, outfile, keep_cells, buffer_length, verbose = TRUE) {
    .Call('_esATAC_filterCells', PACKAGE = 'esATAC', fragments, outfile, keep_cells, buffer_length, verbose)
}

groupCommand <- function(fragments, some_whitelist_cells = NULL, max_lines = 0L, verbose = TRUE) {
    .Call('_esATAC_groupCommand', PACKAGE = 'esATAC', fragments, some_whitelist_cells, max_lines, verbose)
}

fastxrenamer <- function(argvs) {
    .Call('_esATAC_fastxrenamer', PACKAGE = 'esATAC', argvs)
}

sc_fastxrenamer <- function(argvs) {
    .Call('_esATAC_sc_fastxrenamer', PACKAGE = 'esATAC', argvs)
}

mergeFile <- function(destFile, fileList) {
    invisible(.Call('_esATAC_mergeFile', PACKAGE = 'esATAC', destFile, fileList))
}

R_sam2bed_wrapper <- function(argvs, filterList) {
    .Call('_esATAC_R_sam2bed_wrapper', PACKAGE = 'esATAC', argvs, filterList)
}

R_sam2bed_merge_wrapper <- function(argvs, filterList) {
    .Call('_esATAC_R_sam2bed_merge_wrapper', PACKAGE = 'esATAC', argvs, filterList)
}

bedOprUtils <- function(argvs, filterList) {
    .Call('_esATAC_bedOprUtils', PACKAGE = 'esATAC', argvs, filterList)
}

lib_complex_qc <- function(argvs) {
    .Call('_esATAC_lib_complex_qc', PACKAGE = 'esATAC', argvs)
}

ChrDivi_wrapper <- function(argvs) {
    .Call('_esATAC_ChrDivi_wrapper', PACKAGE = 'esATAC', argvs)
}

CutCountPre_wrapper <- function(argvs) {
    .Call('_esATAC_CutCountPre_wrapper', PACKAGE = 'esATAC', argvs)
}

CutSiteCount_wrapper <- function(argvs) {
    .Call('_esATAC_CutSiteCount_wrapper', PACKAGE = 'esATAC', argvs)
}

splitFragments <- function(fragments, cells, idents, unique_idents, outdir, suffix, buffer_length, append = FALSE, verbose = TRUE) {
    .Call('_esATAC_splitFragments', PACKAGE = 'esATAC', fragments, cells, idents, unique_idents, outdir, suffix, buffer_length, append, verbose)
}

validateCells <- function(fragments, cells, find_n, max_lines = 0L, verbose = TRUE) {
    .Call('_esATAC_validateCells', PACKAGE = 'esATAC', fragments, cells, find_n, max_lines, verbose)
}